Index

A

all_fit_results (los_estimator.fitting.MultiSeriesFitter attribute) (los_estimator.visualization.DeconvolutionPlots attribute) all_kernels (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute) animate_fit_deconvolution() (los_estimator.visualization.DeconvolutionAnimator method)

animation (los_estimator.config.OutputFolderConfig attribute) animation_folder (los_estimator.config.VisualizationContext attribute) AnimationConfig (class in los_estimator.config) append() (los_estimator.fitting.fit_results.SeriesFitResult method) (los_estimator.fitting.SeriesFitResult method)

B

bake() (los_estimator.fitting.fit_results.MultiSeriesFitResults method) (los_estimator.fitting.fit_results.SeriesFitResult method) (los_estimator.fitting.MultiSeriesFitResults method) (los_estimator.fitting.SeriesFitResult method)

base (los_estimator.config.OutputFolderConfig attribute) boundaries (los_estimator.fitting.Distribution attribute) boxplot_errors() (los_estimator.visualization.DeconvolutionPlots method) build() (los_estimator.config.OutputFolderConfig method) build_package() (los_estimator.evaluation.WindowDataPackage method)

C

calc_its_comp() (in module los_estimator.fitting.models) calc_its_convolution() (in module los_estimator.fitting.models) calculate_metrics() (los_estimator.evaluation.Evaluator method) colors (los_estimator.config.VisualizationConfig attribute)

combine_past_kernel() (in module los_estimator.fitting.los_fitter) create_failed() (los_estimator.fitting.fit_results.SingleFitResult class method) (los_estimator.fitting.SingleFitResult class method) curve (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute)

D

DataConfig (class in los_estimator.config) DataLoader (class in los_estimator.data) DataPackage (class in los_estimator.data) DataUtils (class in los_estimator.data) debug_config (los_estimator.fitting.MultiSeriesFitter attribute) DEBUG_MODE() (los_estimator.fitting.MultiSeriesFitter method) DebugConfig (class in los_estimator.config) DeconvolutionAnimator (class in los_estimator.visualization) DeconvolutionPlots (class in los_estimator.visualization) df_init (los_estimator.data.DataPackage attribute) df_occupancy (los_estimator.data.DataPackage attribute)

Distribution (class in los_estimator.fitting) distributions (los_estimator.config.ModelConfig attribute) (los_estimator.fitting.MultiSeriesFitter attribute) DistributionTypes (class in los_estimator.fitting) distro (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) distros (los_estimator.evaluation.EvaluationResult attribute) (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute)

E

end_day (los_estimator.config.DataConfig attribute) error_fun (los_estimator.config.ModelConfig attribute)

ErrorType (class in los_estimator.fitting) EvaluationResult (class in los_estimator.evaluation) Evaluator (class in los_estimator.evaluation)

F

figsize (los_estimator.config.VisualizationConfig attribute) figure_dpi (los_estimator.config.VisualizationConfig attribute) figures (los_estimator.config.OutputFolderConfig attribute) figures_folder (los_estimator.config.VisualizationContext attribute) fit() (los_estimator.fitting.MultiSeriesFitter method)

fit_compartmental() (in module los_estimator.fitting.los_fitter) fit_convolution() (in module los_estimator.fitting.los_fitter) fit_distro() (los_estimator.fitting.MultiSeriesFitter method) fit_results (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute)

G

generate_gif (los_estimator.config.AnimationConfig attribute) generate_plots_for_run() (los_estimator.visualization.DeconvolutionPlots method) generate_xticks() (los_estimator.data.DataUtils method)

get_color_palette() (in module los_estimator.visualization) get_dfs() (los_estimator.evaluation.EvaluationResult method) get_objective_convolution() (in module los_estimator.fitting.los_fitter)

I

icu_file (los_estimator.config.DataConfig attribute) ideas (los_estimator.config.ModelConfig attribute) init_parameters (los_estimator.fitting.MultiSeriesFitter attribute) init_params_file (los_estimator.config.DataConfig attribute)

init_values (los_estimator.fitting.Distribution attribute) initialize_distro_parameters() (in module los_estimator.fitting.los_fitter) iterate_index() (los_estimator.evaluation.WindowDataPackage method) iterative_kernel_fit (los_estimator.config.ModelConfig attribute)

K

kernel (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute)

kernel_width (los_estimator.config.ModelConfig attribute)

L

less_distros (los_estimator.config.DebugConfig attribute) less_windows (los_estimator.config.DebugConfig attribute) load_configurations() (in module los_estimator.config) load_icu_data() (los_estimator.data.DataLoader method) load_init_parameters() (los_estimator.data.DataLoader method) los_estimator.cli module los_estimator.config module los_estimator.core module los_estimator.data module

los_estimator.evaluation module los_estimator.fitting module los_estimator.fitting.fit_results module los_estimator.fitting.los_fitter module los_estimator.fitting.models module los_estimator.visualization module los_file (los_estimator.config.DataConfig attribute)

M

main() (in module los_estimator.cli) metric_names (los_estimator.evaluation.EvaluationResult attribute) metrics (los_estimator.config.OutputFolderConfig attribute) minimization_result (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) model_config (los_estimator.core.SeriesData attribute) (los_estimator.core.WindowInfo attribute) (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.MultiSeriesFitter attribute) (los_estimator.fitting.SingleFitResult attribute) (los_estimator.visualization.DeconvolutionPlots attribute) model_data (los_estimator.config.OutputFolderConfig attribute) ModelConfig (class in los_estimator.config)

module los_estimator.cli los_estimator.config los_estimator.core los_estimator.data los_estimator.evaluation los_estimator.fitting los_estimator.fitting.fit_results los_estimator.fitting.los_fitter los_estimator.fitting.models los_estimator.visualization MultiSeriesFitResults (class in los_estimator.fitting) (class in los_estimator.fitting.fit_results) MultiSeriesFitter (class in los_estimator.fitting)

N

n_days (los_estimator.core.SeriesData attribute) n_windows (los_estimator.core.SeriesData attribute) (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute)

name (los_estimator.fitting.Distribution attribute)

O

objective_compartemental() (in module los_estimator.fitting.los_fitter) objective_function_compartmental() (in module los_estimator.fitting.models) one_window (los_estimator.config.DebugConfig attribute)

only_linear (los_estimator.config.DebugConfig attribute) output_config (los_estimator.visualization.DeconvolutionPlots attribute) OutputFolderConfig (class in los_estimator.config)

P

pdf (los_estimator.fitting.Distribution attribute)

plot_error_comparison() (los_estimator.visualization.DeconvolutionPlots method)

R

read_csv() (los_estimator.data.DataLoader method) read_excel() (los_estimator.data.DataLoader method) real_los (los_estimator.config.VisualizationContext attribute) (los_estimator.data.DataPackage attribute) rel_test_error (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) rel_train_error (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute)

results (los_estimator.config.OutputFolderConfig attribute) (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute) results_folder (los_estimator.config.VisualizationContext attribute) reuse_last_parametrization (los_estimator.config.ModelConfig attribute) run_name (los_estimator.config.ModelConfig attribute) (los_estimator.config.OutputFolderConfig attribute)

S

save_configurations() (in module los_estimator.config) save_figures (los_estimator.config.AnimationConfig attribute) (los_estimator.config.VisualizationConfig attribute) save_n_show_animation_frame() (los_estimator.visualization.DeconvolutionAnimator method) save_result() (los_estimator.evaluation.Evaluator method) savefig_dpi (los_estimator.config.VisualizationConfig attribute) savefig_facecolor (los_estimator.config.VisualizationConfig attribute) series_data (los_estimator.fitting.MultiSeriesFitter attribute) (los_estimator.visualization.DeconvolutionPlots attribute) SeriesData (class in los_estimator.core) SeriesFitResult (class in los_estimator.fitting) (class in los_estimator.fitting.fit_results) setup_parser() (in module los_estimator.cli) short_distro_names (los_estimator.config.AnimationConfig attribute)

show_all_error_windows_superimposed() (los_estimator.visualization.DeconvolutionPlots method) show_all_predictions() (los_estimator.visualization.DeconvolutionPlots method) show_error_windows() (los_estimator.visualization.DeconvolutionPlots method) show_figures (los_estimator.config.AnimationConfig attribute) (los_estimator.config.VisualizationConfig attribute) SingleFitResult (class in los_estimator.fitting) (class in los_estimator.fitting.fit_results) start_day (los_estimator.config.DataConfig attribute) step (los_estimator.config.ModelConfig attribute) style (los_estimator.config.VisualizationConfig attribute) success (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) summary (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute) superimpose_kernels() (los_estimator.visualization.DeconvolutionPlots method)

T

test (los_estimator.evaluation.EvaluationResult attribute) test_data (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) test_end (los_estimator.core.WindowInfo attribute) test_error (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) test_error_lim (los_estimator.config.AnimationConfig attribute) test_errors (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute) test_errors_by_distro (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute) test_prediction (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) test_start (los_estimator.core.WindowInfo attribute) test_width (los_estimator.config.ModelConfig attribute) test_window (los_estimator.core.WindowInfo attribute) train (los_estimator.evaluation.EvaluationResult attribute) train_data (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) train_end (los_estimator.core.WindowInfo attribute)

train_error (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) train_error_lim (los_estimator.config.AnimationConfig attribute) train_errors (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute) train_errors_by_distro (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute) train_prediction (los_estimator.fitting.fit_results.SingleFitResult attribute) (los_estimator.fitting.SingleFitResult attribute) train_start (los_estimator.core.WindowInfo attribute) train_test_window (los_estimator.core.WindowInfo attribute) train_width (los_estimator.config.ModelConfig attribute) train_window (los_estimator.core.WindowInfo attribute) transition_delays (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute) transition_delays_by_distro (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute) transition_rates (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute) transition_rates_by_distro (los_estimator.fitting.fit_results.MultiSeriesFitResults attribute) (los_estimator.fitting.MultiSeriesFitResults attribute)

U

update_configurations() (in module los_estimator.config)

V

visualization_context (los_estimator.visualization.DeconvolutionPlots attribute)

VisualizationConfig (class in los_estimator.config) VisualizationContext (class in los_estimator.config)

W

window (los_estimator.core.WindowInfo attribute) window_infos (los_estimator.core.SeriesData attribute) (los_estimator.fitting.fit_results.SeriesFitResult attribute) (los_estimator.fitting.SeriesFitResult attribute)

WindowDataPackage (class in los_estimator.evaluation) WindowInfo (class in los_estimator.core) windows (los_estimator.core.SeriesData attribute)

X

x_full (los_estimator.core.SeriesData attribute) xlims (los_estimator.config.VisualizationConfig attribute) (los_estimator.config.VisualizationContext attribute)

xtick_label (los_estimator.config.VisualizationContext attribute) (los_estimator.data.DataPackage attribute) xtick_pos (los_estimator.config.VisualizationContext attribute) (los_estimator.data.DataPackage attribute)

Y

y_full (los_estimator.core.SeriesData attribute)